Man pages for ptvan/Pmisc
Phu's Misc Functions
| camera2 | A wrapper around limma::camera() that returns weights of the... |
| category_compare | compares the mean expression between two groups of genes in a... |
| cluster_with_dbscan | cluster using DBscan |
| COMPASS_cell_counts | extract cell counts from the COMPASSResult container... |
| COMPASS_cell_counts_nonull | extract cell counts from the COMPASSResult container... |
| extract_citrus_clusters | This function extracts clusted flow cytometric expression... |
| extract_COMPASS_cell_proportions | calculate cell proportions from the COMPASSResult container... |
| extract_COMPASS_cell_proportions_nonull | calculate cell proportions from the COMPASSResult container... |
| extract_degree_from_COMPASS | extract polyfunctionality degree from a COMPASSResult object |
| extract_degree_from_melted_counts | extract polyfunctionality degree from a table of melted... |
| extract_lm_pval | extracts F-statistic from a linear model object then... |
| extract_tsne_rectangle | plots the output of a tSNE run on ICS flow data, overlays... |
| gene_compare | compares the mean expression between two groups of genes in a... |
| gene_compare_with_weights | compares the mean expression between two groups of genes in a... |
| make_gsea_overlap_igraph | this function takes a bioConductor EList (eg.... |
| make_STRING_igraph | this function takes an input matrix having one column named... |
| plotpca | this is a convenience wrapper to make plotting PCA biplots a... |
| WGCNA_one_run | perform a single run of the Weight Gene Correlation Network... |
