WGCNA_one_run: perform a single run of the Weight Gene Correlation Network...

In ptvan/Pmisc: Phu's Misc Functions

Description

perform a single run of the Weight Gene Correlation Network Analysis (WGCNA, Langfelder 2008) modified from original code by Carl Murie

Usage

WGCNA_one_run(
  dat,
  netType = "unsigned",
  pow = NULL,
  iter = 1,
  defaultPow = 3,
  showPlots = TRUE,
  ds = 1
)

Arguments

dat	A matrix of gene expression
netType	String indicating network type, default "unsigned"
pow	Integer indicating power
iter	Integer indicating number of iterations
defaultPow	Integer indicating default power
showPlots	Boolean indicating whether to plot
ds	Integer between 0 and 4, tree cutting parameter

Value

table of cluster memberships

Examples

## Not run: 
out <- WGCNA_one_run(dat, "unsigned", 1,1,3,TRUE,1)

## End(Not run)

ptvan/Pmisc documentation built on Nov. 19, 2020, 10:27 p.m.