camera2: A wrapper around limma::camera() that returns weights of the...

In ptvan/Pmisc: Phu's Misc Functions

Description

A wrapper around limma::camera() that returns weights of the linear model

Usage

camera2(
  y,
  index,
  design = NULL,
  contrast = ncol(design),
  weights = NULL,
  use.ranks = FALSE,
  allow.neg.cor = FALSE,
  inter.gene.cor = 0.01,
  trend.var = FALSE,
  sort = TRUE,
  ...
)

Arguments

y	a matrix of gene expression values
index	'camera' parameter
design	'camera' parameter
contrast	'camera' parameter
weights	'camera' parameter
use.ranks	'camera' parameter
allow.neg.cor	'camera' parameter
inter.gene.cor	'camera' parameter
trend.var	'camera' parameter
sort	'camera' parameter
...	other parameters to be passed to 'camera()'

Value

list of 2 tables: summary of weights, and gene-level values

ptvan/Pmisc documentation built on Nov. 19, 2020, 10:27 p.m.