extract_COMPASS_cell_proportions_nonull: calculate cell proportions from the COMPASSResult container...
In ptvan/Pmisc: Phu's Misc Functions
Description
Usage
Arguments
Value
View source: R/COMPASS_functions.R
Description
This function calculates percentages EXCLUDING THE NULL CATEGORY
eg. you have 10000 cells
5 cells express IL2 only, 3 cells express IFNg only, 2 cells express both (10 cells express any)
the percentages returned by this fx are IL2 = 5/10 = 0.5, IFNg = 3/10 = 0.3, IL2+IFNg = 2/10 = 0.2
this is different than when the calculation is over ALL cells (10000 in this example)
Usage
1
Arguments
CR
A COMPASSResult object
Value
table cell proportions, null category is NOT included
ptvan/Pmisc documentation built on Nov. 19, 2020, 10:27 p.m.
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Description Usage Arguments Value
View source: R/COMPASS_functions.R
Description
This function calculates percentages EXCLUDING THE NULL CATEGORY eg. you have 10000 cells 5 cells express IL2 only, 3 cells express IFNg only, 2 cells express both (10 cells express any) the percentages returned by this fx are IL2 = 5/10 = 0.5, IFNg = 3/10 = 0.3, IL2+IFNg = 2/10 = 0.2 this is different than when the calculation is over ALL cells (10000 in this example)
Usage
1 |
Arguments
CR |
A COMPASSResult object |
Value
table cell proportions, null category is NOT included
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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