Man pages for pvrqualitasag/PedigreeFromTvdData
Import pedigree data from TVD-Input files
| all_birthdate_consistent | check whether all non-NA birthdates are consistent |
| all_parent_id_consistent | Check whether all ids of a given parent (mother or father)... |
| build_check_pedigree_from_tvd | Read K11-formatted TVD-data to build a pedigree |
| check_birthdate | Validation of birthdate border and limit |
| check_birthdate_tbl | Validation of birthdate format using tbl_df pedigree |
| check_parent_as_animal | Check whether parents appear as animals |
| check_parent_older_offspring | Check that parents are older than their offspring |
| check_sex | Validation of sex |
| check_sex_tbl | Validation of sex format using tbl_df pedigree |
| check_tvdid | Validation of tvd-number |
| check_tvd_id_tbl | Checking Format of TVD-Ids in Pedigree ptblPedigree |
| check_unique_animal_id | Check for uniqueness of Animal-IDs in a pedigree |
| clean_build_install | Cleanup, build vignettes, documents and install |
| correct_tvd_format | Correct Ids in column pnIdCol which do not have the correct... |
| correct_tvd_format_tbl | Correct Ids in column pnIdCol which do not have the correct... |
| getBirthdateBorder | Get consistency border for birthdate |
| getBirthdateColIdx | Get column index of birthdate in tbl_df pedigree |
| getBirthdateColIdxDsch | Get column index for birthdate with new DSCH-format |
| getBirthdayConsistencyLimit | Get consistency limits for birthdates |
| getColPositions | Return default column positions for fixed width coming from... |
| getConsistencySex | Get consistency sex |
| getDschFormatTblDf | Get Format from DSCH xlsx-file as tbl_df |
| getFormatBorder | Return default border values for fixed input format |
| getFormatDSCHFile | Return path to the DSCH-format file |
| getK11ColPositionFromDsch | Get K11 Format from the DSCH-format file |
| getK11ColPositionVecFromDsch | Get K11 Column positions as vector |
| getSexColIdxDsch | Get column index for sex with new DSCH-format |
| getTVDIdBorder | Get consistency border for TVDid |
| getTvdIdCols | Return default column indices for Ids |
| getTvdIdColsDsch | Get column indices of different IDs in pedigree tbl_df |
| is.notletter | Check the country-code in TVDid |
| is.notnumber | Check the number-code in TVDid |
| laf_open_fwf_tvd_input | Read TVD-Pedigree from inputfile using LaF::laf_open_fwf() |
| output | Output Pedigree from TVD-Data |
| PedigreeFromTvdData | PedigreeFromTvdData: Import pedigree from K11-formatted... |
| readr_fwf_tvd_input | Read TVD-Pedigree from file using readr::read_fwf() |
| read_tvd_input | Reading TVD data and construct a pedigree |
| remove_rec | Removing a series of records |
| set_field_na | Setting one field of a list of records in a pedigree to NA |
| subBlank | Substitute blanks and replace empty string by NA |
| transform_check_birthdate_tbl | Transformation of incorrect birthdate format using tbl_df... |
| transform_check_parent_older_offspring | Transformation after check if parents are older than their... |
| transform_check_sex_tbl | Transformation after check of sex format using tbl_df... |
| transform_correct_tvd_format_tbl | Transformation after check Correct Ids format in column... |
| transform_unique_animal_id | Transformation after check for uniqueness of Animal-IDs in a... |
| unique_id | Add unique number to each record |
| write_checkedtransformed_pedgiree_from_tvd | Write checked pedigree to an output file |
