all_parent_id_consistent: Check whether all ids of a given parent (mother or father)...

In pvrqualitasag/PedigreeFromTvdData: Import pedigree data from TVD-Input files

Description

Given a pedigree as tbl_df, it is first run through the TVD-ID check using the function PedigreeFromTvdData::check_tvd_id_tbl(). As a result, we get the checked pedigree. The original pedigree in p_tbl_ped and the checked pedigree are compared and the result is returned as a list indicating whether the two pedigrees are consistent and if not with a vector of row-indices where inconsistencies did occur.

Given a pedigree as tbl_df, it is first run through the TVD-ID check using the function PedigreeFromTvdData::check_tvd_id_tbl(). As a result, we get the checked pedigree. The original pedigree in p_tbl_ped and the checked pedigree are compared and the result is returned as a list indicating whether the two pedigrees are consistent and if not with a vector of row-indices where inconsistencies did occur.

Usage

all_parent_id_consistent(p_tbl_ped, plIdCols, pn_parent_col, pb_out = FALSE)

all_parent_id_consistent(p_tbl_ped, plIdCols, pn_parent_col, pb_out = FALSE)

Arguments

p_tbl_ped	original pedigree as tbl_df
plIdCols	list with column indices for all ids, required for checking
pn_parent_col	column index of parent to be checked
pb_out	flag indicating whether debugging output should be written
p_b_out	flag indicating whether output should be written
p_tbl_ped	original pedigree as tbl_df
plIdCols	list with column indices for all ids, required for checking
pn_parent_col	column index of parent to be checked

Value

list indicating result of consistency check and list of row indices with inconsistent IDs

list indicating result of consistency check and list of row indices with inconsistent IDs

pvrqualitasag/PedigreeFromTvdData documentation built on May 29, 2019, 7:50 a.m.