README.md

In pwatrick/DrugRepurposingToolKit: A High-Throughput Approach Integrating Gene Expression Signatures and Clinical Data to Repurpose Drugs

DrugRepurposingToolKit R package

A High-Throughput Approach Integrating Gene Expression Signatures and Clinical Data to Repurpose Drugs.

Introduction

This R package contains functions to integrate gene expression and clinical data to identify and validate drug repurposing candidates.

Installation

To install the latest development version directly from GitHub, use:

#Install required packages
devtools::install_github("pwatrick/DrugRepurposingToolKit")

User Documentation

• Documentation can be found on the package website.
• Example for identifying drug repurposing candidates using gene expression signature matching can be found at vignette
• Example for performing query on the All of Us Research Program workbench, data processing, and statistical testing vignette.

License

Apache License 2.0

Development

This package was developed in RStudio.

Development status

This package is ready for use.

Citation

Wu, P., Feng, Q., Kerchberger, V.E. et al. Integrating gene expression and clinical data to identify drug repurposing candidates for hyperlipidemia and hypertension. Nat Commun 13, 46 (2022). https://doi.org/10.1038/s41467-021-27751-1

pwatrick/DrugRepurposingToolKit documentation built on Aug. 10, 2024, 7:12 a.m.