Man pages for pwatrick/DrugRepurposingToolKit
A High-Throughput Approach Integrating Gene Expression Signatures and Clinical Data to Repurpose Drugs
| add_subanalysis_flags | Flag patients for subanalysis |
| calculate_comorbidity_scores | Calculates Elixhauser comorbidity scores |
| clean_process_clinical_data | Clean and process EHR data |
| ddi_ohdsi_rxnorm | ddi_ohdsi_rxnorm |
| ddi_rxcui2in | ddi_rxcui2in |
| ddi_rxcui_names | ddi_rxcui_names |
| define_observation_periods | Define baseline and treatment periods |
| dr_ts_tutorial_data | dr_ts_tutorial_data |
| drugsHyperlipidemia | drugsHyperlipidemia |
| drugsHypertension | drugsHypertension |
| extract_clinical_data | Extract clinical data from All of Us dataset |
| extract_icd_codes | Function to get ICD data for calculating elixhauser scores |
| map_drugs_to_ingredients | For drug repurposing EHR validation studies, map patient... |
| observation_period_drug_exposures | Get baseline and treatment period drug exposures |
| ohdsi_icd_elix | ohdsi_icd_elix |
| process_biomarker | Process biomarkers data |
| process_clinical_data_lmm | Clean and process EHR data for linear mixed model analysis |
| process_covariates | Process covariates data |
| vw_weights | vw_weights |
