get_contacts: Create a contact matrix from a data frame containing a list...

Description Usage Arguments Value See Also

View source: R/get_contacts.R

Description

Create a contact matrix from a data frame containing a list of contacts.

Usage

1
get_contacts(matrix_file, region)

Arguments

matrix_file

Input data frame. Usually the output of read_tabix

region

Region of interest (chr:start-end)

Value

numeric matrix with the number of contacts per pair of loci and genomic coordinates as dimnames

See Also

read_tabix for data retrieval


qenvio/hicvidere documentation built on May 24, 2017, 1:24 p.m.