plot_contacts: Plot a HiC map from a contact matrix.
In qenvio/hicvidere:
Description
Usage
Arguments
Value
See Also
Examples
Description
This function takes a contact matrix and plots a HiC map
Usage
1
2
plot_contacts(contacts, rotate = T, transformation = log10,
col.palette = brewer.pal(9, "Blues"))
Arguments
contacts
Input contact matrix. Usually the output of get_contacts
rotate
Do you want matrix to be rotated so the diagonal is from top-left to bottom-right? Dafaults to TRUE
transformation
Transformation of the data to ease the visualization. Dafaults to log10
col.palette
Palette of colors used in the representation
Value
A nice plot
See Also
read_tabix and get_contacts for data retrieval
Examples
1
plot(0)
qenvio/hicvidere documentation built on May 26, 2019, 11:35 a.m.
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Description Usage Arguments Value See Also Examples
Description
This function takes a contact matrix and plots a HiC map
Usage
1 2 | plot_contacts(contacts, rotate = T, transformation = log10,
col.palette = brewer.pal(9, "Blues"))
|
Arguments
contacts |
Input contact matrix. Usually the output of |
rotate |
Do you want matrix to be rotated so the diagonal is from top-left to bottom-right? Dafaults to TRUE |
transformation |
Transformation of the data to ease the visualization. Dafaults to log10 |
col.palette |
Palette of colors used in the representation |
Value
A nice plot
See Also
read_tabix and get_contacts for data retrieval
Examples
1 | plot(0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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