Description Usage Arguments Value See Also Examples
This function takes a contact matrix and plots a HiC map
1 2 | plot_contacts(contacts, rotate = T, transformation = log10,
col.palette = brewer.pal(9, "Blues"))
|
contacts |
Input contact matrix. Usually the output of |
rotate |
Do you want matrix to be rotated so the diagonal is from top-left to bottom-right? Dafaults to TRUE |
transformation |
Transformation of the data to ease the visualization. Dafaults to log10 |
col.palette |
Palette of colors used in the representation |
A nice plot
read_tabix
and get_contacts
for data retrieval
1 | plot(0)
|
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