make_contacts: Get contact matrix from compressed and indexed reads

In qenvio/hicvidere:

Description

This function takes a compressed and indexed file of contact reads and returns a contact matrix

Usage

make_contacts(infile, region, window)

Arguments

infile	Input tab separated, compressed and indexed contact's read file (chr1 pos1 strand1 chr2 pos2 strand2 read_ID)
region	Region to retrieve the contacts from. Accepts expression wit the format "chr:start-position", "chr:start" or "chr"
window	Resolution in bp

Value

A squared matrix of contacts

See Also

read_tabix and get_contacts for data retrieval

Examples

plot(0)

qenvio/hicvidere documentation built on May 26, 2019, 11:35 a.m.