plot_tf_network: Plot sub-network centered around one TF.

In quadbiolab/Pando: Inferring regulomes from multi-modal single-cell genomics data

Plot sub-network centered around one TF.

Description

Plot sub-network centered around one TF.

Usage

plot_tf_network(object, ...)

## S3 method for class 'GRNData'
plot_tf_network(
  object,
  tf,
  network = DefaultNetwork(object),
  graph = "module_graph",
  circular = TRUE,
  edge_width = 0.2,
  edge_color = c(`-1` = "darkgrey", `1` = "orange"),
  node_size = 3,
  text_size = 10,
  label_nodes = c("tfs", "all", "none"),
  color_edges = TRUE
)

Arguments

object	An object.
tf	The transcription factor to center around.
network	Name of the network to use.
graph	Name of the graph.
circular	Logical. Layout tree in circular layout.
edge_width	Edge width.
edge_color	Edge color.
node_size	Node size.
text_size	Font size for labels.
label_nodes	String, indicating what to label. 'tfs' - Label all TFs. 'all' - Label all genes. 'none' - Label nothing (except the root TF).
color_edges	Logical, whether to color edges by direction.

Value

A GRNData object.

quadbiolab/Pando documentation built on April 22, 2024, 8:14 a.m.