Man pages for quadbiolab/simspec
Calculate data representation of Reference/Cluster Similarity Spectrum
| build_knn_graph | Build kNN network |
| cluster_sim_spectrum | Calculate Cluster Similarity Spectrum |
| construct_pseudocells | Construct pseudocells by averaging transcriptome of similar... |
| css_project | Prject data to the CSS representation using the given... |
| estimate_projection_failure | Estimate likelihood of projection failure |
| rank_input_matrix | Generate ranked sparse matrix |
| ref_sim_spectrum | Calculate Reference Similarity Spectrum |
| regress_out_from_embeddings | Regress out variables from cell embeddings |
| rowNorm | Normalize each row of the given matrix to be sum of 1 |
| run_PCA | Principal component analysis on dimension reduced data |
| transfer_labels | Transfer labels from the reference to the query data set |
