css_project: Prject data to the CSS representation using the given...

In quadbiolab/simspec: Calculate data representation of Reference/Cluster Similarity Spectrum

Prject data to the CSS representation using the given calculation model

Description

Calculate CSS representation using a given model. It is used to project new data to the existing reference atlas which is already represented by CSS

Usage

## Default S3 method:
css_project(object, model, use_fast_rank = TRUE)

## S3 method for class 'Seurat'
css_project(
  object,
  model,
  use_fast_rank = TRUE,
  reduction.name = "css_proj",
  reduction.key = "CSSPROJ_"
)

css_project(object, ...)

Arguments

object	An object
model	Calculation model of the reference CSS representation
use_fast_rank	When the presto package is available, use its rank_matrix function to rank sparse matrix
reduction.name	Reduction name of the projected CSS representation in the returned Seurat object
reduction.key	Reduction key of the projected CSS representation in the returned Seurat object

quadbiolab/simspec documentation built on March 8, 2024, 11:59 p.m.