regress_out_from_embeddings: Regress out variables from cell embeddings

In quadbiolab/simspec: Calculate data representation of Reference/Cluster Similarity Spectrum

Regress out variables from cell embeddings

Description

Regress out variables from cell embeddings with a linear model

Usage

regress_out_from_embeddings(object, ...)

## Default S3 method:
regress_out_from_embeddings(object, vars)

## S3 method for class 'Seurat'
regress_out_from_embeddings(
  object,
  reduction,
  vars_to_regress,
  reduction.name = reduction,
  reduction.key = NULL
)

Arguments

object	An object
vars	Data frame of the variables to regress out
reduction	Name of the reduction object to use
vars_to_regress	Variables in the meta.data slot for regressing out
reduction.name	Name of the new reduction object
reduction, key	Key of the returned reduction

quadbiolab/simspec documentation built on March 8, 2024, 11:59 p.m.