run_PCA: Principal component analysis on dimension reduced data

In quadbiolab/simspec: Calculate data representation of Reference/Cluster Similarity Spectrum

Principal component analysis on dimension reduced data

Description

Do PCA analysis on dimension reduced data to further reduce data dimensionality

Usage

run_PCA(object, ...)

## Default S3 method:
run_PCA(object, npcs = 50, return_rotation = F, ...)

## S3 method for class 'Seurat'
run_PCA(
  object,
  reduction,
  npcs = 10,
  reduction.name = NULL,
  reduction.key = NULL,
  return_rotation = FALSE,
  ...
)

Arguments

object	An object
npcs	Number of PCs to compute
return_rotation	Whether to return the PCA rotations to the misc slot
reduction	The reduction to run PCA on
reduction.name	Name of the returned reduction
reduction.key	Key of the returned reduction

quadbiolab/simspec documentation built on March 8, 2024, 11:59 p.m.