Files in quantifish/TagGrowth
Mixed effects model of capture-mark-recapture-age data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/MakeADGrowth.R
R/TagGrowth.version.R
R/difftime.R
R/normalise.R
R/onLoad.R
R/plot_annual_devs.R
R/plot_growth.R
R/plot_histogram_k.R
R/plot_histogram_z.R
R/plot_indiv_growth.R
R/plot_indiv_growth_2.R
R/plot_linf.R
R/plot_obs_pred.R
R/plot_palette.R
R/plot_parameters.R
R/plot_resids.R
R/plot_simulations.R
R/plot_standard_resids.R
R/plot_theme.R
R/read_all_powers.R
R/read_all_simulations.R
R/read_simulations.R
R/summarise.simulations.R
R/time_step.R
R/validate.R
README.md
Webber_Thorson_2016.pdf
data/README.md
data/toothfish.RData
data/toothfish.csv
examples/TagGrowth.rdf
examples/case_study/FIG3.png
examples/case_study/FIG4.png
examples/case_study/FIG5.png
examples/case_study/Fit_Models.R
examples/case_study/Link_AGE_TR.R
examples/case_study/README.md
examples/case_study/plot.R
examples/case_study/v0/IndivGrowth.eps
examples/case_study/v0/ObsVsPred.eps
examples/case_study/v0/Pars.csv
examples/case_study/v0/Report.RData
examples/case_study/v0/Report.txt
examples/case_study/v0/obj.RData
examples/case_study/v0/opt.RData
examples/case_study/v1/Pars.csv
examples/case_study/v1/Report.RData
examples/case_study/v1/Report.txt
examples/case_study/v1/obj.RData
examples/case_study/v1/opt.RData
examples/case_study/v2/Pars.csv
examples/case_study/v2/Report.RData
examples/case_study/v2/Report.txt
examples/case_study/v2/obj.RData
examples/case_study/v2/opt.RData
examples/case_study/v3/Pars.csv
examples/case_study/v3/Report.RData
examples/case_study/v3/Report.txt
examples/case_study/v3/obj.RData
examples/case_study/v3/opt.RData
examples/case_study/v4/Pars.csv
examples/case_study/v4/Report.RData
examples/case_study/v4/Report.txt
examples/case_study/v4/obj.RData
examples/case_study/v4/opt.RData
examples/case_study/v6/Pars.csv
examples/case_study/v6/Report.RData
examples/case_study/v6/Report.txt
examples/case_study/v6/obj.RData
examples/case_study/v6/opt.RData
examples/simulation_study/Age1_Calc.png
examples/simulation_study/Age2_Calc.png
examples/simulation_study/Debug.R
examples/simulation_study/Estimate_Simulations.R
examples/simulation_study/FIG1.png
examples/simulation_study/FIG2.png
examples/simulation_study/Growth_Model.R
examples/simulation_study/Liberty_Calc.png
examples/simulation_study/README.md
examples/simulation_study/Simulate_Growth.R
examples/simulation_study/plots_for_paper.R
examples/simulation_study/sim_k/est_k/results/SimPars.png
examples/simulation_study/sim_k/est_k/results/TracePars.png
examples/simulation_study/sim_k/est_kz/results/SimPars.png
examples/simulation_study/sim_k/est_kz/results/TracePars.png
examples/simulation_study/sim_k/est_none/results/SimPars.png
examples/simulation_study/sim_k/est_none/results/TracePars.png
examples/simulation_study/sim_k/est_z/results/SimPars.png
examples/simulation_study/sim_k/est_z/results/TracePars.png
examples/simulation_study/sim_kz/est_k/results/SimPars.png
examples/simulation_study/sim_kz/est_k/results/TracePars.png
examples/simulation_study/sim_kz/est_kz/results/SimPars.png
examples/simulation_study/sim_kz/est_kz/results/TracePars.png
examples/simulation_study/sim_kz/est_none/results/SimPars.png
examples/simulation_study/sim_kz/est_none/results/TracePars.png
examples/simulation_study/sim_kz/est_z/results/SimPars.png
examples/simulation_study/sim_kz/est_z/results/TracePars.png
examples/simulation_study/sim_none/est_k/results/SimPars.png
examples/simulation_study/sim_none/est_k/results/TracePars.png
examples/simulation_study/sim_none/est_kz/results/SimPars.png
examples/simulation_study/sim_none/est_kz/results/TracePars.png
examples/simulation_study/sim_none/est_none/results/SimPars.png
examples/simulation_study/sim_none/est_none/results/TracePars.png
examples/simulation_study/sim_none/est_z/results/SimPars.png
examples/simulation_study/sim_none/est_z/results/TracePars.png
examples/simulation_study/sim_z/est_k/results/SimPars.png
examples/simulation_study/sim_z/est_k/results/TracePars.png
examples/simulation_study/sim_z/est_kz/results/SimPars.png
examples/simulation_study/sim_z/est_kz/results/TracePars.png
examples/simulation_study/sim_z/est_none/results/SimPars.png
examples/simulation_study/sim_z/est_none/results/TracePars.png
examples/simulation_study/sim_z/est_z/results/SimPars.png
examples/simulation_study/sim_z/est_z/results/TracePars.png
examples/simulation_study/v0/100/results/SimPars.png
examples/simulation_study/v0/100/results/TracePars.png
examples/simulation_study/v0/250/results/SimPars.png
examples/simulation_study/v0/250/results/TracePars.png
examples/simulation_study/v0/50/results/SimPars.png
examples/simulation_study/v0/50/results/TracePars.png
examples/simulation_study/v0/500/results/SimPars.png
examples/simulation_study/v0/500/results/TracePars.png
examples/simulation_study/v0/results/IndivGrowth_3.png
examples/simulation_study/v0/results/ObsVsPred_3.png
examples/simulation_study/v0/results/SimPars.png
examples/simulation_study/v0/results/SimPars_2.pdf
examples/simulation_study/v0/results/SimPars_2.png
examples/simulation_study/v0/results/TracePars.png
examples/simulation_study/v1/100/results/SimPars.png
examples/simulation_study/v1/100/results/TracePars.png
examples/simulation_study/v1/250/results/SimPars.png
examples/simulation_study/v1/250/results/TracePars.png
examples/simulation_study/v1/50/results/SimPars.png
examples/simulation_study/v1/50/results/TracePars.png
examples/simulation_study/v1/500/results/SimPars.png
examples/simulation_study/v1/500/results/TracePars.png
examples/simulation_study/v1/results/IndivGrowth_3.png
examples/simulation_study/v1/results/ObsVsPred_3.png
examples/simulation_study/v1/results/REs_b_3.png
examples/simulation_study/v1/results/SimPars.png
examples/simulation_study/v1/results/TracePars.png
examples/simulation_study/v2/100/results/SimPars.png
examples/simulation_study/v2/100/results/TracePars.png
examples/simulation_study/v2/250/results/SimPars.png
examples/simulation_study/v2/250/results/TracePars.png
examples/simulation_study/v2/50/results/SimPars.png
examples/simulation_study/v2/50/results/TracePars.png
examples/simulation_study/v2/500/results/SimPars.png
examples/simulation_study/v2/500/results/TracePars.png
examples/simulation_study/v2/results/IndivGrowth_3.png
examples/simulation_study/v2/results/ObsVsPred_3.png
examples/simulation_study/v2/results/SimPars.png
examples/simulation_study/v2/results/TracePars.png
examples/simulation_study/v3/100/results/SimPars.png
examples/simulation_study/v3/100/results/TracePars.png
examples/simulation_study/v3/250/results/SimPars.png
examples/simulation_study/v3/250/results/TracePars.png
examples/simulation_study/v3/50/results/SimPars.png
examples/simulation_study/v3/50/results/TracePars.png
examples/simulation_study/v3/500/results/SimPars.png
examples/simulation_study/v3/500/results/TracePars.png
examples/simulation_study/v3/results/IndivGrowth_3.png
examples/simulation_study/v3/results/ObsVsPred_3.png
examples/simulation_study/v3/results/REs_b_3.png
examples/simulation_study/v3/results/SimPars.png
examples/simulation_study/v3/results/TracePars.png
inst/executables/ATR.cpp
man/MakeADGrowth.Rd
man/TagGrowth.version.Rd
man/normalise.Rd
man/plot_annual_devs.Rd
man/plot_growth.Rd
man/plot_histogram_k.Rd
man/plot_histogram_z.Rd
man/plot_indiv_growth.Rd
man/plot_indiv_growth_2.Rd
man/plot_linf.Rd
man/plot_obs_pred.Rd
man/plot_palette.Rd
man/plot_parameters.Rd
man/plot_resids.Rd
man/plot_simulations.Rd
man/plot_standard_resids.Rd
man/plot_theme.Rd
man/read_all_powers.Rd
man/read_all_simulations.Rd
man/read_simulations.Rd
man/time_step.Rd
