Man pages for quevedor2/aneuploidy_score
Calculate the Aneuploidy Score from Chromosome Arm SCNAs/Aneuploidies
| checkIfWGD | Whole genome doubling checker |
| cytobandToArm | cytobandToArm: Reduces cytoband data to chromosome arms |
| dot-classifyCN | Classify CN into Loss/Neut/Gain |
| dot-getChrarmFractions | Gets fraction of intervals that make up each GR object |
| dot-validateSeg | Validates if the seg is compatible with this R package |
| getCAA | Seg to CN Chromosomal Fractions |
| listData | listData |
| reduceArms | Reduce Arm/Seg level CN to an aneuploidy score |
| seg | Demo .seg file |
| ucsc.hg19.cytoband | hg19 UCSC cytoband table |
| ucsc.hg38.cytoband | hg38 UCSC cytoband table |
| ucsc.mm10.cytoband | mm10 UCSC cytoband table |
| ucsc.mm39.cytoband | mm39 UCSC cytoband table |
| ucsc.mm9.cytoband | mm9 UCSC cytoband table |
