dot-getChrarmFractions: Gets fraction of intervals that make up each GR object
In quevedor2/aneuploidy_score: Calculate the Aneuploidy Score from Chromosome Arm SCNAs/Aneuploidies
Description
Usage
Arguments
Value
Description
Takes a GRanges object (ideally and designed for
a single chromosome or chromosome arm) and founds out what fraction
of the total chr/chr_arm each interval makes up of it. It does this
for all intervals with a copy number value (non-NA in cn_col), as
well as with NA's removed (no CN value (NA) in cn_col).
Usage
1
.getChrarmFractions(gr, cn_col = "CN", classifyCN = FALSE, ...)
Arguments
gr
GRanges object of a chromosome or chromosome arm
cn_col
Column in GRanges object containing CN values [Default='CN']
classifyCN
classify arm-CN into Loss/Neut/Gain [Boolean]
...
Parameters for .classifyCN() function
Value
2-column data frame of chr_fractions with NA's included
and NA's excluded
quevedor2/aneuploidy_score documentation built on Feb. 26, 2021, 12:13 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Takes a GRanges object (ideally and designed for a single chromosome or chromosome arm) and founds out what fraction of the total chr/chr_arm each interval makes up of it. It does this for all intervals with a copy number value (non-NA in cn_col), as well as with NA's removed (no CN value (NA) in cn_col).
Usage
1 | .getChrarmFractions(gr, cn_col = "CN", classifyCN = FALSE, ...)
|
Arguments
gr |
GRanges object of a chromosome or chromosome arm |
cn_col |
Column in GRanges object containing CN values [Default='CN'] |
classifyCN |
classify arm-CN into Loss/Neut/Gain [Boolean] |
... |
Parameters for .classifyCN() function |
Value
2-column data frame of chr_fractions with NA's included and NA's excluded
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.