seg: Demo .seg file
In quevedor2/aneuploidy_score: Calculate the Aneuploidy Score from Chromosome Arm SCNAs/Aneuploidies
Description
Usage
Format
Source
Description
A .seg file from CCLE's 639-V urinary carcinoma cell line, processed using ASCAT
with the allele-specific and total copy numbers represented, as well as the L2R.
The data frame was converted into a GenomicRanges object.
Usage
1
Format
A data frame with 384 ranges and 6 metadata columns variables:
- nMajor
Haplotype A specific copy number
- nMinor
Haplotype B specific copy number
- nAraw
Haplotype A specific copy number (raw)
- nBraw
Haplotype B specific copy number (raw)
- TCN
Total copy number
- seg.mean
Log 2 Ratio (L2R) segment mean
...
Source
https://portals.broadinstitute.org/ccle
quevedor2/aneuploidy_score documentation built on Feb. 26, 2021, 12:13 p.m.
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Description Usage Format Source
Description
A .seg file from CCLE's 639-V urinary carcinoma cell line, processed using ASCAT with the allele-specific and total copy numbers represented, as well as the L2R. The data frame was converted into a GenomicRanges object.
Usage
1 |
Format
A data frame with 384 ranges and 6 metadata columns variables:
- nMajor
Haplotype A specific copy number
- nMinor
Haplotype B specific copy number
- nAraw
Haplotype A specific copy number (raw)
- nBraw
Haplotype B specific copy number (raw)
- TCN
Total copy number
- seg.mean
Log 2 Ratio (L2R) segment mean
...
Source
https://portals.broadinstitute.org/ccle
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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