View source: R/SSexecutivesummary.r
SSexecutivesummary | R Documentation |
Take the output from SS_output()
and create executive summary .csv files
as required by the current Terms of Reference for U.S. West Coast
groundfish assessments. Additionally, .csv files of historical catches,
time-series, and numbers-at-age are created.
SSexecutivesummary(
replist,
plotfolder = "default",
ci_value = 0.95,
es_only = FALSE,
fleetnames = NULL,
add_text = "model area",
so_units = "millions of eggs",
tables = lifecycle::deprecated(),
divide_by_2 = FALSE,
endyr = NULL,
adopted_ofl = NULL,
adopted_abc = NULL,
adopted_acl = NULL,
forecast_ofl = NULL,
forecast_abc = NULL,
format = lifecycle::deprecated(),
match_digits = lifecycle::deprecated(),
verbose = TRUE
)
replist |
A list object created by |
plotfolder |
Directory where a new |
ci_value |
To calculate confidence intervals, the desired interval must be specified. The default is 0.95. |
es_only |
A logical that specifies if only the executive summary tables
should be produced. The default is |
fleetnames |
Optional replacement for fleetnames used in data file. |
add_text |
A single character object, where the default is |
so_units |
A single character object specifying the unit of measurement
that spawning output is reported in. The default is "millions of eggs".
This text will be used in the table captions. If fecundity is equal to
weight-at-length, then the units are hard-wired to |
tables |
Deprecated as of version 1.49.1 because this function only takes 15 seconds to run and overwriting old tables should not be a problem if users are modifying the .csv files in a programmatic way. The function behavior is the same as the previous default behavior where all tables will be created. |
divide_by_2 |
A logical allowing the output to be based on single sex
values based on the new sex specification (-1) in SS3 for single sex
models. Default value is |
endyr |
Optional input to choose a different ending year for tables,
which could be useful for catch-only updates. The default is |
adopted_ofl , adopted_abc , adopted_acl |
Vectors of adopted overfishing
limits (OFL), acceptable biological catch (ABC), and annual catch limits
(ACL) values to be printed in the management performance table. These
vectors MUST BE be vectors of length 10. The default of |
forecast_ofl , forecast_abc |
Optional input vectors for management
adopted OFL and ABC values for table g. These values will overwrite the
OFL and ABC values in the projection table, rather than the model
estimated OFL values. As an example, |
format |
Deprecated as of version 1.49.1 because most users are now
using LaTeX instead of microsoft word so formatting can be done inside
|
match_digits |
Deprecated as of version 1.49.1 because this function just returns an unformatted csv file now. |
verbose |
A logical value specifying if output should be printed to the screen. |
Individual .csv files for each executive summary table and additional tables (catch, timeseries, numbers-at-age).
Chantel R. Wetzel, Kelli F. Johnson, Ian G. Taylor
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