r4ss-package: r4ss: R Code for Stock Synthesis

In r4ss/r4ss: R Code for Stock Synthesis

r4ss: R Code for Stock Synthesis

Description

A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of 'r4ss' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.22, from October 2023). Support for 3.24 models is only through the core functions for reading output and plotting.

Author(s)

Maintainer: Ian G. Taylor [e-mail]

Authors:

• Ian J. Stewart

• Allan C. Hicks

• Tommy M. Garrison

• Andre E. Punt

• R.I.C. Chris Francis

• John R. Wallace

• Chantel R. Wetzel

• James T. Thorson

• Yukio Takeuchi

• Kotaro Ono

• Cole C. Monnahan

• Christine C. Stawitz

• Z. Teresa A'mar

• Athol R. Whitten

• Kelli F. Johnson

• Robbie L. Emmet

• Sean C. Anderson

• Gwladys I. Lambert

• Megan M. Stachura

• Andrew B. Cooper

• Andi Stephens

• Neil L. Klaer

• Carey R. McGilliard

• Iago Mosqueira

• Watal M. Iwasaki

• Kathryn L. Doering

• Andrea M. Havron

• Nathan R. Vaughan

• LaTreese S. Denson

• Ashleigh J. Novak

• Henning Winker

• Lee Qi

• Megumi Oshima

• Eric Fletcher

• Elizabeth F. Gugliotti

• Kiva L. Oken

See Also

Useful links:

• https://github.com/r4ss/r4ss

• https://r4ss.github.io/r4ss/

• Report bugs at https://github.com/r4ss/r4ss/issues

Examples

## Not run: 
# it's useful to create a variable for the directory with the model output
mydir <- file.path(
  path.package("r4ss"),
  file.path("extdata", "simple_small")
)

# read the model output and print diagnostic messages
replist <- SS_output(
  dir = mydir,
  verbose = TRUE,
  printstats = TRUE
)

# plots the results
SS_plots(replist)

## End(Not run)

r4ss/r4ss documentation built on April 30, 2024, 4:42 a.m.