iterate_jitter: Execute a single jittered model run

In r4ss/r4ss: R Code for Stock Synthesis

Execute a single jittered model run

Description

Execute a single jittered model run

Usage

iterate_jitter(
  i,
  printlikes = TRUE,
  exe = "ss3",
  verbose = FALSE,
  init_values_src = 0,
  dir = NULL,
  extras = NULL,
  ...
)

Arguments

i	Index of the jitter iteration.
printlikes	A logical value specifying if the likelihood values should be printed to the console.
exe	Executable name. Can be just the name of the executable file if it is in the specified directory or in the user's PATH. Can also include the absolute path or a path relative to the specified directory. Needs to be a single character string, not a vector. On Windows, exe can optionally have the .exe extension appended; on Unix-based systems (i.e., Mac and Linux), no extension should be included.
verbose	A logical value specifying if output should be printed to the screen.
init_values_src	Either zero or one, specifying if the initial values to jitter should be read from the control file or from the par file, respectively. Cannot be NULL. Defaults to zero (initial values read from control file).
dir	Directory where model files are located.
extras	Additional ADMB command line arguments passed to the executable, such as "-nohess"
...	Additional arguments passed to run()

Value

Negative log-likelihood of one jittered model

Author(s)

James T. Thorson, Kelli F. Johnson, Ian G. Taylor, Kathryn L. Doering, Kiva L. Oken

r4ss/r4ss documentation built on April 30, 2024, 4:42 a.m.