combine_exps | Combine and compare proteomics experiments. |
combine_reps | Combine replicates for a proteomics experiment. |
compute_fxn | Compute fold-change values for XICs and PSMs & Z-scores for... |
enrich | Annotate and compute fold-changes and Z-scores for... |
format_pd_file | Format a Proteins.txt file output by Proteome Discoverer 2.3,... |
format_psm_file | Format a PSM.txt file output by Proteome Discoverer 2.3,... |
impute_fxn | Impute minimum values for AUC XICs for each accession in both... |
psmplot | Visualize control PSMs versus test PSMs on a log-log plot. |
zplot | Plot Z-scores across biological replicates. |
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