format_psm_file: Format a PSM.txt file output by Proteome Discoverer 2.3,...
In rachaelcox/enrichr: Compute Protein Enrichment
Description
Usage
Arguments
Value
Description
Format a PSM.txt file output by Proteome Discoverer 2.3, summing technical replicates and demarcating test and control PSMs.
Usage
1
format_psm_file(exp_id, meta_file, psm_file)
Arguments
exp_id
An identifier for a given experiment that matches both test and control files.
meta_file
A tab-separate file with column headers exp_name (populated with values that correspond to exp_id variable), type (exp or ctrl), and file_id (determined by Proteome Discoverer, see README).
psm_file
PSM.txt tab-separated file output by Proteome Discoverer 2.3.
Value
A dataframe with PSMs summarized for each accession in test and control cases.
rachaelcox/enrichr documentation built on Jan. 19, 2021, 2:11 p.m.
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Description Usage Arguments Value
Description
Format a PSM.txt file output by Proteome Discoverer 2.3, summing technical replicates and demarcating test and control PSMs.
Usage
1 | format_psm_file(exp_id, meta_file, psm_file)
|
Arguments
exp_id |
An identifier for a given experiment that matches both test and control files. |
meta_file |
A tab-separate file with column headers |
psm_file |
PSM.txt tab-separated file output by Proteome Discoverer 2.3. |
Value
A dataframe with PSMs summarized for each accession in test and control cases.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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