format_pd_file: Format a Proteins.txt file output by Proteome Discoverer 2.3,...
In rachaelcox/enrichr: Compute Protein Enrichment
Description
Usage
Arguments
Value
Description
Format a Proteins.txt file output by Proteome Discoverer 2.3, summing technical replicates and demarcating test and control PSMs.
Usage
1
format_pd_file(exp_id, meta_file, pd_file, psm_df)
Arguments
exp_id
An identifier for a given experiment that matches both test and control files.
meta_file
A tab-separate file with column headers exp_name (populated with values that correspond to exp_id variable, type (exp or ctrl) file_id (determined by Proteome Discoverer).
pd_file
Proteins.txt tab-separated file output by Proteome Discoverer 2.3.
psm_df
A dataframe output from format_psm_file().
Value
A dataframe with AUC XIC values, PSM counts and additional PSM info summarized for each accession in test and control cases.
rachaelcox/enrichr documentation built on Jan. 19, 2021, 2:11 p.m.
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Description Usage Arguments Value
Description
Format a Proteins.txt file output by Proteome Discoverer 2.3, summing technical replicates and demarcating test and control PSMs.
Usage
1 | format_pd_file(exp_id, meta_file, pd_file, psm_df)
|
Arguments
exp_id |
An identifier for a given experiment that matches both test and control files. |
meta_file |
A tab-separate file with column headers |
pd_file |
Proteins.txt tab-separated file output by Proteome Discoverer 2.3. |
psm_df |
A dataframe output from |
Value
A dataframe with AUC XIC values, PSM counts and additional PSM info summarized for each accession in test and control cases.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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