combine_exps: Combine and compare proteomics experiments.

In rachaelcox/enrichr: Compute Protein Enrichment

Description

Combine different proteomics experiments, i.e., an HA-tag pulldown and a TurboID-biotin pulldown. Compares joint z-scores and FDR across each experiment. See README for file formats and example usage on the enrichr GitHub Repository.

Usage

combine_exps(exp1, exp2, exp1_id, exp2_id, outfile_prefix)

Arguments

exp1	A data frame produced by combine_reps() corresponding to experiment 1.
exp2	A data frame produced by combine_reps() corresponding to experiment 2.
exp1_id	Prefix that will annotate experiment 1 columns.
exp2_id	Prefix that will annotate experiment 2 columns.
outfile_prefix	Optional. File prefix for output .csv files. Default = "exps_combined".

Value

A data frame and .csv with PSM information across biological replicates combined into one table.

rachaelcox/enrichr documentation built on Jan. 19, 2021, 2:11 p.m.