Man pages for radamsRHA/ThetaMater
ThetaMater: Bayesian estimation of the population size parameter theta from genomic data
| Coal.Theta.Sim | Coal.Theta.Sim: function to simulate a vector (k.vec) of... |
| Coal.Theta.Sim.File | Coal.Theta.Sim.File: function to simulate a vector (k.vec) of... |
| Coal.Theta.Sim.File.G | Coal.Theta.Sim.File.G: function to simulate a vector (k.vec)... |
| Compute.RateAVG.R | Compute.RateAVG: function to compute the average rate... |
| FilterData.PPS | FilterData.PPS: function to filter data using a threshold... |
| Read.AllelesFile | Read.AllelesFile: Function to read PyRAD *.alleles files and... |
| Read.DiploidFasta | Read.DiploidFasta: Function to read diploid genome sequence... |
| Read.FastaDir | Read.FastaDir: Function to read a set of locus-specific fasta... |
| Read.InterleavedFasta | Read.InterleavedFasta: Function to read interleaved fasta... |
| Read.NexusDir | Read.NexusDir: Function to read a set of locus-specific nexus... |
| ThetaDataLike | ThetaDataLike |
| ThetaDataLikeGamma | ThetaDataLikeGamma |
| ThetaMater.M0 | ThetaMater.M0: (Bayesian Model 1) Simple MCMC algorithm to... |
| ThetaMater.M1 | ThetaMater.M1: (Bayesian Model 2) MCMC function that uses the... |
| ThetaMater.M2 | ThetaMater.M2: (Bayesian Model 2) MCMC function that uses the... |
| ThetaMater.M3 | ThetaMater.M3: (Bayesian Model 2) MCMC function that uses the... |
| ThetaMater.PPS | ThetaMater.PPS: function to simulate posterior predictive... |
