raivokolde/seqlm: A method to find differentially methylated regions.

A method to identify differentially methylated segments from high density chip data. The algorithm works in two stages. First, the probes are segmented into consecutive regions with similar difference between sample groups. Then, the statistical tests are run on top of the identified regions to rank them based on the statistical significance.

Getting started

Package details

AuthorKaspar Märtens, Raivo Kolde
MaintainerRaivo Kolde <[email protected]>
LicenseGPL-2
Version0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("raivokolde/seqlm")
raivokolde/seqlm documentation built on Jan. 15, 2019, 1:28 a.m.