raivokolde/seqlm: A method to find differentially methylated regions.
A method to identify differentially methylated segments from high density chip data. The algorithm works in two stages. First, the probes are segmented into consecutive regions with similar difference between sample groups. Then, the statistical tests are run on top of the identified regions to rank them based on the statistical significance.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Kaspar Märtens, Raivo Kolde |
| Maintainer | Raivo Kolde <rkolde@gmail.com> |
| License | GPL-2 |
| Version | 0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
