seqlmplots: Visualise the regions

In raivokolde/seqlm: A method to find differentially methylated regions.

Description

Generate plots about the seqlm results

Usage

seqlmplots(segments, values, genome_information, annotation, expand = 100,
  ylim = extendrange(values), dir = NA, filetype = "png", ...)

Arguments

segments	selection of significant regions by seqlm function
values	same values matrix that was used in seqlm
genome_information	same genome_information object that was used in seqlm
annotation	same annotation vector that was used in seqlm
expand	number of basepairs to extend the region on plot
ylim	two element vector giving the lower and higher limit of the y axis
dir	directory where to put the images, of NA then plots are drawn into the plotting window
filetype	picture filetype
...	extra parameters to ggsave

Details

The number of results from seqlm can be large and visualising all these regions might not be desirable. Therefore, it is advisable to filter the results befor plotting.

Author(s)

Raivo Kolde <[e-mail]>

raivokolde/seqlm documentation built on May 26, 2019, 9:59 p.m.