seqlmreport: Generate the HTML report for the seqlm results

Description Usage Arguments Author(s)

Description

Generate the HTML report for the seqlm results

Usage

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seqlmreport(segments, values, genome_information, annotation,
  ylim = extendrange(values), dir = NA, expand = 100, width = 8,
  height = 5, dpi = 100, main = "seqlm results")

Arguments

segments

selection of significant regions by seqlm function

values

same values matrix that was used in seqlm

genome_information

same genome_information object that was used in seqlm

annotation

same annotation vector that was used in seqlm

ylim

two element vector giving the lower and higher limit of the y axis

dir

directory where to put the page, if the directory does not exist it will be created

expand

number of basepairs to extend the region on plot

width

picture width in inches

height

picture height in inches

dpi

dots per inch, to calibrate the picture size in pixels

main

title for the report

Author(s)

Kaspar Martens <kmartens@ut.ee> Raivo Kolde <rkolde@gmail.com>


raivokolde/seqlm documentation built on May 26, 2019, 9:59 p.m.