Extract downstream basic statistics such as cell number, median numger of reads,
genes, UMIs per cell. The data.table
package is used for fast reading
of the DGE matrices.
1 2 | extractDownstreamStatistics(object, dge.name = NULL, reads.by.cell = NULL,
min.umi = 250, read.stats = NULL)
|
object |
The exact location of the folder containing the analyzed data. |
dge.name |
The file containing the DGE. If none is provided, the function assumes
that DGE is stored under the name |
reads.by.cell |
The |
min.umi |
The minimum number of UMIs to keep a cell and not discard it. |
read.stats |
A |
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