Description Usage Arguments Value
Extract statistics from mapped reads, such as total number of reads, uniquely mapped reaqds, percentages of intronic/intergenic etc. The function makes use of the R package Rsamtools (part of Bioconductor).
1 | extractReadStatistics(object, yieldSize = 10^6, sample.name = NULL)
|
object |
A string describing the exact location of the BAM file for the sample under consideration. |
yieldSize |
Large BAM files are processed in batches because of memory
issues. The parameter |
sample.name |
A string describing the sample. |
A data.frame
containing the computed statistics.
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