Files in rajewsky-lab/dropseq
dropbead
.Rbuildignore
.gitignore
DESCRIPTION
Dropbead tutorial.html
NAMESPACE
R/DGEMatrix.R
R/MixedSpeciesSample.R
R/SingleSpeciesSample.R
R/Tools.R
R/plottingMethods.R
README.md
data/cell_cycle_genes.xlsx
dropbead.Rproj
man/assignCellCyclePhases.Rd
man/classifyCellsAndDoublets.Rd
man/collapseCellsByBarcode.Rd
man/compareGeneExpressionLevels-MixedSpeciesSample-method.Rd
man/compareGeneExpressionLevels.Rd
man/compareSingleCellsAgainstBulk.Rd
man/computeCorrelationSingleCellsVersusBulk.Rd
man/computeGenesPerCell.Rd
man/computeMitochondrialPercentage.Rd
man/computeTranscriptsPerCell.Rd
man/extractDownstreamStatistics.Rd
man/extractReadStatistics.Rd
man/findInflectionPoint.Rd
man/geneExpressionDispersion.Rd
man/geneExpressionMean.Rd
man/geneExpressionSumUMI.Rd
man/keepBestCells.Rd
man/listCellsToCollapse-MixedSpeciesSample-method.Rd
man/listCellsToCollapse.Rd
man/mergeMultipleDGEs.Rd
man/plotCellTypes.Rd
man/plotCumulativeFractionOfReads.Rd
man/plotHeatmapCorrelationMatrixDGE.Rd
man/plotHistogram.Rd
man/plotMitochondrialContent.Rd
man/plotViolin.Rd
man/removeCells.Rd
man/removeLowQualityCells.Rd
man/removeLowQualityGenes.Rd
man/splitDgeByGenesAndCellsOfSpecies.Rd
man/splitDgeByGenesOfSpecies.Rd
man/splitMixedSpeciesSampleToSingleSpecies.Rd
tests/tests.R
tutorial.Rmd
tutorial.html
