getDNAShapeParamValues: get DNA shape parameter values for a provided DNA sequence...
In ramseylab/regshape: An ensemble classifier for regulatory elements based on DNA sequence-based shape parameters
Description
Usage
Arguments
Value
Examples
Description
get DNA shape parameter values for a provided DNA sequence string
get DNA parameters: MGW, Prot, Roll, and Helt, the length of sequence should >=6
Usage
1
getDNAShapeParamValues(seq.string)
Arguments
seq.string
A DNA sequence, or a set of DNA sequences
Value
the parameter values for MGW, Prot, Roll, and Helt, for each hexamer subsequence
of seq.string, all concatenated together as one vector (MGW parameter values first, then
Propeller twist parameter values, then roll values, and then helix twist parameter values)
Examples
1
getDNAShapeParamValues("ACGTAGATAG")
ramseylab/regshape documentation built on May 26, 2019, 10:55 p.m.
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Description Usage Arguments Value Examples
Description
get DNA shape parameter values for a provided DNA sequence string get DNA parameters: MGW, Prot, Roll, and Helt, the length of sequence should >=6
Usage
1 | getDNAShapeParamValues(seq.string)
|
Arguments
seq.string |
A DNA sequence, or a set of DNA sequences |
Value
the parameter values for MGW, Prot, Roll, and Helt, for each hexamer subsequence of seq.string, all concatenated together as one vector (MGW parameter values first, then Propeller twist parameter values, then roll values, and then helix twist parameter values)
Examples
1 | getDNAShapeParamValues("ACGTAGATAG")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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