getShapeScoresSlidingWindow: get DNA shape score for a set of sequences
In ramseylab/regshape: An ensemble classifier for regulatory elements based on DNA sequence-based shape parameters
Description
Usage
Arguments
Value
Examples
Description
get DNA shape score for a set of sequences
Usage
1
getShapeScoresSlidingWindow(seq.chars, wlen)
Arguments
seq.chars
A character string composed of "A", "C", "G", or "T" characters
wlen
A positive integer indicating the window size (in bp) for computing the DNA shape
based voting fraction score for the regulatory element classifier
Value
a vector of voting fraction scores in the range [0-1], for the DNA shape-based regulatory element classifier,
at each position of the sliding window (length of the vector is nchar(seq.chars) - wlen + 1).
Examples
1
getShapeScoresSlidingWindow("ACGATATGAACTAGACTAGTAGAGTAGAGC", 8)
ramseylab/regshape documentation built on May 26, 2019, 10:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
get DNA shape score for a set of sequences
Usage
1 | getShapeScoresSlidingWindow(seq.chars, wlen)
|
Arguments
seq.chars |
A character string composed of "A", "C", "G", or "T" characters |
wlen |
A positive integer indicating the window size (in bp) for computing the DNA shape based voting fraction score for the regulatory element classifier |
Value
a vector of voting fraction scores in the range [0-1], for the DNA shape-based regulatory element classifier, at each position of the sliding window (length of the vector is nchar(seq.chars) - wlen + 1).
Examples
1 | getShapeScoresSlidingWindow("ACGATATGAACTAGACTAGTAGAGTAGAGC", 8)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.