map.snps: Search for SNPs

Description Usage Arguments Examples

Description

This function attributes SNPs to genes.

Usage

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map.snps(gene.chr, gene.start, gene.end, snp.chr, snp.pos, dist = 10^3)

Arguments

gene.chr

chromosome: numeric vector with one entry per gene

gene.start

start position: numeric vector with one entry per gene

gene.end

end position: numeric vector with one entry per gene

snp.chr

integer 1-22

snp.pos

chromosomal position of SNPs: numeric vector with one entry per SNP

dist

number of base pairs before start position: integer

Examples

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gene.chr <- rep(1,times=5)
gene.start <- 1:5
gene.end <- 2:6

snp.chr <- rep(1,times=100)
snp.pos <- seq(from=1,to=4.9,length.out=100)

map.snps(gene.chr,gene.start,gene.end,snp.chr,snp.pos,dist=0)

rauschenberger/spliceQTL documentation built on May 13, 2019, 3:02 a.m.