test.multiple: Conduct multiple tests

Description Usage Arguments Details Examples

Description

This function tests for alternative splicing.

Usage

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test.multiple(Y, X, map, w.type = NULL, spec = 1, min = 100,
  steps = 20)

Arguments

Y

exon expression: matrix with n rows (samples) and p columns (exons)

X

SNP genotype: matrix with n rows (samples) and q columns (SNPs)

map

list with names "genes", "exons", and "snps" (output from map.genes, map.exons, and map.snps)

w.type

string: if W=NULL and w.type is a given string, take the type: "cov" is the only one allowed. Then the inner product of the indep data X is taken

spec

number of cores: positive integer

min

minim chunk size: positive integer

steps

number of iteration chunks: positive integer

Details

Automatic adjustment of the number of permutations such that Bonferroni-significant p-values are possible.

Examples

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rauschenberger/spliceQTL documentation built on May 13, 2019, 3:02 a.m.