This R package includes various functions for applying the global test of alternative splicing. Some functions only work on the virtual machine (see below).
Prepare BBMRI and Geuvadis data:
get.snps.geuvadis
(not VM)
get.snps.bbmri
(only VM)
get.exons.geuvadis
(only VM)
get.exons.bbmri
(only VM)
Process samples and covariates:
match.samples
adjust.samples
adjust.variables
Search for exons and SNPs:
map.genes
map.exons
map.snps
drop.trivial
Test for alternative splicing:
test.single
test.multiple
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