EnvStats: Interfaces for EnvStats package for data science pipelines.

In rbertolusso/intubate: Interface to Popular R Functions for Data Science Pipelines

Description

Interfaces to EnvStats functions that can be used in a pipeline implemented by magrittr.

Usage

#ntbt_calibrate(data, ...)   ## Not implement for 0.99.3 as needs an attach()
ntbt_gofTest(data, ...)
ntbt_gofGroupTest(data, ...)
ntbt_kendallSeasonalTrendTest(data, ...)
ntbt_kendallTrendTest(data, ...)
ntbt_stripChart(data, ...)
ntbt_summaryFull(data, ...)
ntbt_summaryStats(data, ...)
ntbt_varGroupTest(data, ...)

Arguments

data	data frame, tibble, list, ...
...	Other arguments passed to the corresponding interfaced function.

Details

Interfaces call their corresponding interfaced function.

Value

Object returned by interfaced function.

Author(s)

Roberto Bertolusso

Examples

## Not run: 
library(intubate)
library(magrittr)
library(EnvStats)


## ntbt_calibrate: Fit a Calibration Line or Curve
#Cadmium <- EPA.97.cadmium.111.df$Cadmium 
#Spike <- EPA.97.cadmium.111.df$Spike 
data(EPA.97.cadmium.111.df)
## Original function to interface
calibrate(Cadmium ~ Spike, data = EPA.97.cadmium.111.df) 

## NOTE: --check-as-cran does not like having an attach()
##       in the code, which is needed to interface
##       calibrate (at least for now). I will get back
##       to this after 0.99.3 is submitted. Please do not
##       report as bug (instead please find a solution to this!)

## The interface puts data as first parameter
#ntbt_calibrate(EPA.97.cadmium.111.df, Cadmium ~ Spike)

## so it can be used easily in a pipeline.
#EPA.97.cadmium.111.df %>%
#  ntbt_calibrate(Cadmium ~ Spike) 


## ntbt_gofGroupTest: Goodness-of-Fit Test for a Specified Probability
##                    Distribution for Groups
## Original function to interface
gofGroupTest(Nickel.ppb ~ Well, data = EPA.09.Ex.10.1.nickel.df)

## The interface puts data as first parameter
ntbt_gofGroupTest(EPA.09.Ex.10.1.nickel.df, Nickel.ppb ~ Well)

## so it can be used easily in a pipeline.
EPA.09.Ex.10.1.nickel.df %>%
  ntbt_gofGroupTest(Nickel.ppb ~ Well)

## ntbt_gofTest: Goodness-of-Fit Test
## Original function to interface
gofTest(Nickel.ppb ~ 1, data = EPA.09.Ex.10.1.nickel.df)

## The interface puts data as first parameter
ntbt_gofTest(EPA.09.Ex.10.1.nickel.df, Nickel.ppb ~ 1)

## so it can be used easily in a pipeline.
EPA.09.Ex.10.1.nickel.df %>%
  ntbt_gofTest(Nickel.ppb ~ 1)


## ntbt_kendallSeasonalTrendTest: Nonparametric Test for Monotonic Trend Within
##                                Each Season Based on Kendall's Tau Statistic
## Original function to interface
kendallSeasonalTrendTest(Unadj.Conc ~ Month + Year, data = EPA.09.Ex.14.8.df)

## The interface puts data as first parameter
ntbt_kendallSeasonalTrendTest(EPA.09.Ex.14.8.df, Unadj.Conc ~ Month + Year)

## so it can be used easily in a pipeline.
EPA.09.Ex.14.8.df %>%
  ntbt_kendallSeasonalTrendTest(Unadj.Conc ~ Month + Year)


## ntbt_kendallTrendTest: Kendall's Nonparametric Test for Montonic Trend
## Original function to interface
kendallTrendTest(Sulfate.ppm ~ Sampling.Date, data = EPA.09.Ex.17.6.sulfate.df)

## The interface puts data as first parameter
ntbt_kendallTrendTest(EPA.09.Ex.17.6.sulfate.df, Sulfate.ppm ~ Sampling.Date)

## so it can be used easily in a pipeline.
EPA.09.Ex.17.6.sulfate.df %>%
  ntbt_kendallTrendTest(Sulfate.ppm ~ Sampling.Date)


## ntbt_stripChart: 1-D Scatter Plots with Confidence Intervals
## Original function to interface
stripChart(TcCB ~ Area, data = EPA.94b.tccb.df, col = c("red", "blue"), 
           p.value = TRUE, ci.and.test = "nonparametric", 
           ylab = "TcCB (ppb)")

## The interface puts data as first parameter
ntbt_stripChart(EPA.94b.tccb.df, TcCB ~ Area, col = c("red", "blue"), 
                p.value = TRUE, ci.and.test = "nonparametric", 
                ylab = "TcCBntbt_summaryFull (ppb)")

## so it can be used easily in a pipeline.
EPA.94b.tccb.df %>%
  ntbt_stripChart(TcCB ~ Area, col = c("red", "blue"), 
                  p.value = TRUE, ci.and.test = "nonparametric", 
                  ylab = "TcCB (ppb)")


## ntbt_summaryFull: Full Complement of Summary Statistics
## Original function to interface
summaryFull(TcCB ~ Area, data = EPA.94b.tccb.df)

## The interface puts data as first parameter
ntbt_summaryFull(EPA.94b.tccb.df, TcCB ~ Area)

## so it can be used easily in a pipeline.
EPA.94b.tccb.df %>%
  ntbt_summaryFull(TcCB ~ Area)


## ntbt_summaryStats: Summary Statistics
## Original function to interface
summaryStats(log10(TcCB) ~ Area, data = EPA.94b.tccb.df)

## The interface puts data as first parameter
ntbt_summaryStats(EPA.94b.tccb.df, log10(TcCB) ~ Area)

## so it can be used easily in a pipeline.
EPA.94b.tccb.df %>%
  ntbt_summaryStats(log10(TcCB) ~ Area)


## ntbt_varGroupTest: Test for Homogeneity of Variance Among Two or More Groups
## Original function to interface
varGroupTest(Arsenic.ppb ~ Well, data = EPA.09.Ex.11.1.arsenic.df)

## The interface puts data as first parameter
ntbt_varGroupTest(EPA.09.Ex.11.1.arsenic.df, Arsenic.ppb ~ Well)

## so it can be used easily in a pipeline.
EPA.09.Ex.11.1.arsenic.df %>%
  ntbt_varGroupTest(Arsenic.ppb ~ Well)

## End(Not run)

rbertolusso/intubate documentation built on May 27, 2019, 3 a.m.