GsvaGeneSets-class: 'GsvaGeneSets' class

In rcastelo/GSVA: Gene Set Variation Analysis for Microarray and RNA-Seq Data

GsvaGeneSets class

Description

Virtual superclass of gene set classes supported by GSVA.

Details

GSVA supports gene sets consisting of gene identifiers as either a named list of character vectors or an object of class GSEABase::GeneSetCollection. Alternatively, gene sets may be specified as a named list of integer vectors in the range of 1:nrow(X) that are indices to the rows of the corresponding expression data matrix X. This class union allows to store any of these in a slot of another class as well as defining common methods for them.

See Also

list, GeneSetCollection

rcastelo/GSVA documentation built on June 14, 2025, 6:38 p.m.