GsvaMethodParam-class: 'GsvaMethodParam' class

In rcastelo/GSVA: Gene Set Variation Analysis for Microarray and RNA-Seq Data

GsvaMethodParam class

Description

Virtual superclass of method parameter classes supported by GSVA.

A virtual superclass of the GSVA packages' method-specific parameter classes.

Details

GSVA implements four single-sample gene set analysis methods: PLAGE, combined z-scores, ssGSEA, and GSVA. All of them take at least an expression data matrix and one or many gene sets as input. This virtual class provides the necessary slots for this minimum parameter set and serves as all GSVA method parameter classes,

The GSVA package implements four single-sample gene set analysis methods (PLAGE, combined z-scores, ssGSEA, and GSVA) and a respective method-specific parameter class that is used to invoke each of them with a matching set of parameters.

See Also

GsvaExprData, GsvaGeneSets, zscoreParam, plageParam, ssgseaParam, gsvaParam

plageParam, zscoreParam, ssgseaParam, gsvaParam

rcastelo/GSVA documentation built on April 29, 2024, 11:26 a.m.