Files in rcastelo/qpgraph
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
DESCRIPTION
NAMESPACE
NEWS
R/AllClass.R
R/AllGeneric.R
R/Defunct.R
R/HMgmm-methods.R
R/SsdMatrix.R
R/UGgmm-methods.R
R/Utils.R
R/eQTLcross-methods.R
R/eQTLnetwork-methods.R
R/eQTLnetworkEstimate.R
R/eQTLnetworkEstimationParam-methods.R
R/graphParam-methods.R
R/qpCItest.R
R/qpGraph-methods.R
R/qpSimulate.R
R/qpgraph.R
R/zzz.R
README.md
cleanup
configure
configure.ac
data/EcoliOxygen.RData
inst/CITATION
inst/doc/BasicUsersGuide.pdf
inst/snow/RMPInode.R
inst/snow/RNWSnode.R
inst/snow/RPVMnode.R
inst/snow/RSOCKnode.R
inst/unitTests/test_qpCItest.R
inst/unitTests/test_qpNrr.R
inst/unitTests/test_rgraphBAM.R
man/EcoliOxygen.Rd
man/HMgmm-class.Rd
man/SsdMatrix-class.Rd
man/UGgmm-class.Rd
man/eQTLcross-class.Rd
man/eQTLnetwork-class.Rd
man/eQTLnetworkEstimate.Rd
man/eQTLnetworkEstimationParam-class.Rd
man/filterCollinearities.Rd
man/graphParam-class.Rd
man/qpAllCItests.Rd
man/qpAnyGraph.Rd
man/qpAvgNrr.Rd
man/qpBoundary.Rd
man/qpCItest.Rd
man/qpClique.Rd
man/qpCliqueNumber.Rd
man/qpCov.Rd
man/qpEdgeNrr.Rd
man/qpFunctionalCoherence.Rd
man/qpG2Sigma.Rd
man/qpGenNrr.Rd
man/qpGetCliques.Rd
man/qpGraph-class.Rd
man/qpGraphDensity.Rd
man/qpHTF.Rd
man/qpHist.Rd
man/qpIPF.Rd
man/qpImportNrr.Rd
man/qpK2ParCor.Rd
man/qpNrr.Rd
man/qpPAC.Rd
man/qpPCC.Rd
man/qpPRscoreThreshold.Rd
man/qpPathWeight.Rd
man/qpPlotMap.Rd
man/qpPlotNetwork.Rd
man/qpPrecisionRecall.Rd
man/qpRndGraph.Rd
man/qpRndWishart.Rd
man/qpTopPairs.Rd
man/qpUnifRndAssociation.Rd
man/qpUpdateCliquesRemoving.Rd
man/qpgraph-package.Rd
src/Makevars.in
src/Makevars.win
src/cliquer.c
src/cliquer.h
src/cliquerconf.h
src/graph.c
src/graph.h
src/misc.h
src/qpgraph.c
src/reorder.c
src/reorder.h
src/set.h
tests/runTests.R
tools/config.guess
tools/config.sub
tools/install-sh
vignettes/eQTLnetworks.Rnw
vignettes/qpTxRegNet.Rnw
vignettes/qpgraph.bib
vignettes/qpgraphSimulate.Rnw
