inst/snow/RSOCKnode.R

In rcastelo/qpgraph: Estimation of genetic and molecular regulatory networks from high-throughput genomics data

local({
    master <- "localhost"
    port <- ""
    snowlib <- Sys.getenv("R_SNOW_LIB")
    outfile <- Sys.getenv("R_SNOW_OUTFILE") ##**** defaults to ""; document

    args <- commandArgs()
    pos <- match("--args", args)
    args <- args[-(1 : pos)]
    for (a in args) {
        pos <- regexpr("=", a)
        name <- substr(a, 1, pos - 1)
        value <- substr(a,pos + 1, nchar(a))
        switch(name,
               MASTER = master <- value,
               PORT = port <- value,
               SNOWLIB = snowlib <- value,
               OUT = outfile <- value)
    }

    if (! (snowlib %in% .libPaths()))
        .libPaths(c(snowlib, .libPaths()))
    library(methods) ## because Rscript as of R 2.7.0 doesn't load methods
    library(snow, warn.conflicts=FALSE) ## added warn.conflicts=FALSE to have a silent startup

    if (port == "") port <- getClusterOption("port")

    sinkWorkerOutput(outfile)
    cat("starting worker for", paste(master, port, sep = ":"), "\n")
    ## slaveLoop(makeSOCKmaster(master, port))
    setDefaultClusterOptions(masterNode=makeSOCKmaster(master, port))
    slaveLoop(getClusterOption("masterNode"))
})