Files in rcorty/mvGWAS
Uses the DGLM packge (double generalized linear model) to do a GWAS, assess significance of results, and plot results
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/InvestigateDGSNP.R
R/PermutationNullByDGSNP.R
R/PhenotypeByDGSNP.R
R/QQPlot.R
R/conduct_scan.R
R/genomic_control.R
R/make_test_data.R
R/mvGWAS.R
R/plots.R
R/utils.R
README.Rmd
README.md
man/internals.Rd
man/mvGWAS.Rd
man/mvGWAS_apply_genomic_control.Rd
man/mvGWAS_conduct_scan.Rd
man/mvGWAS_internals.Rd
man/mvGWAS_manhattan_plot.Rd
man/mvGWAS_qq_plot.Rd
man/mvGWAS_write_results_to_file.Rd
mvGWAS.Rproj
sandbox.R
tests/benchmarking.R
tests/test_InvestigateDGSNP.R
tests/test_QQPlot.R
tests/test_data/test_genos1.vcf
tests/test_data/test_genos2.vcf
tests/test_data/test_genos3.vcf
tests/test_data/test_phenos.RDS
tests/testthat.R
tests/testthat/test_mvGWAS.R
vignettes/getting_started.R
vignettes/getting_started.Rmd
vignettes/getting_started.html
vignettes/running_on_a_SLURM_cluster.R
vignettes/running_on_a_SLURM_cluster.Rmd
vignettes/running_on_a_SLURM_cluster.html
