mvGWAS_conduct_scan: conduct_scan

In rcorty/mvGWAS: Uses the DGLM packge (double generalized linear model) to do a GWAS, assess significance of results, and plot results

Description

conducts a genome scan locally

conducts a genome scan on a slurm cluster

conducts an mvGWAS

Arguments

num_cores	the number of cores to use for a local scan. Defaults to parallel::detectCores().
job_time_in_mins	amount of time to request from SLURM for each job (in minutes). Defaults to 360.
vcf_files_per_job	number of vcf files each job should scan. Defaults to 1.
max_num_jobs	the maximum number of jobs to submit to SLURM.
mean_formula	the mean formula
var_formula	the variance formula
computer	Either 'local' (default) or 'slurm'. Should the scan be conducted on the local machine or on a slurm cluster.

Details

The actual number of jobs submitted to the cluster is min(max_num_jobs, ceiling(num_vcf_files/vcf_files_per_job)).

Value

nothing

nothing

the mvGWAS object (change this?)

rcorty/mvGWAS documentation built on May 31, 2019, 1:58 p.m.