mvGWAS_manhattan_plot: Manhattan Plot
In rcorty/mvGWAS: Uses the DGLM packge (double generalized linear model) to do a GWAS, assess significance of results, and plot results
Description
makes a manhattan plot for a mvGWAS
Arguments
what_to_plot
what to plot
lowest_nlog_p_to_plot
lowest neg log10 p to plot
highlight_nlog_p_above
highlight neg log10 p value above this number with larger points
highlight_size
how big are the highlight points
nonhighlight_alpha
how transparent are the non-highlighted points
Value
the plot
rcorty/mvGWAS documentation built on May 31, 2019, 1:58 p.m.
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Description
makes a manhattan plot for a mvGWAS
Arguments
what_to_plot |
what to plot |
lowest_nlog_p_to_plot |
lowest neg log10 p to plot |
highlight_nlog_p_above |
highlight neg log10 p value above this number with larger points |
highlight_size |
how big are the highlight points |
nonhighlight_alpha |
how transparent are the non-highlighted points |
Value
the plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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