mvGWAS: Reference Class for Mean-Variance GWASs
In rcorty/mvGWAS: Uses the DGLM packge (double generalized linear model) to do a GWAS, assess significance of results, and plot results

A reference class implementing a Mean-Variance Genome Wide Association Study

Initialize an mvGWAS object

`phenotype_file`	The file that stores the phenotypes. Must be a .CSV or .RDS. Must have one column called 'ID'.
`genotype_directory`	The directory that stores the genotypes. They must be in .vcf.gz format.
`genotype_file_pattern`	the pattern
`devel`	whether to stop being finnicky

an mvGWAS object

created_at: when the mvGWAS was created
metadata: information about the mvGWAS
data: the data used to conduct the mvGWAS
null_model: the model fit without any SNPs
results: the results of the mvGWAS
genomic_control_dfs: data_frames holding the details of genomic control corrections applied

rcorty/mvGWAS documentation built on May 31, 2019, 1:58 p.m.

rcorty/mvGWAS index

README.md

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