In recognition that there are many factors (genetic loci, macro- genetic factors such as sex, and environmental factors) that influence the extent of environmental variation, the 'vqtl' package conducts genome scans that accommodate and target these factors. The main functions of this package, scanonevar() and scanonevar.perm() take as input a cross object from the popular 'qtl' package, as described in Corty and Valdar (2019) <doi:10.1534/g3.118.200642>.
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