Description Usage Arguments Value Author(s) Examples
utilities for working with scanonevar objects
1 2 3 4 5 6 7 8 9 10 11 | is.scanonevar(x)
is.scanonevar.w.perms(x)
is.cross(x)
is.f2.cross(x)
is.f2.cross(x)
is.cross.w.genoprobs(x)
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x |
object being tested |
TRUE is X is a scanonevar object, FALSE otherwise.
TRUE if x is a scanone var with perms (typically, outputted from scanonevar.perm), and FALSE otherwise.
TRUE if x is a cross object, FALSE otherwise.
TRUE if x is a cross object of type F2, FALSE otherwise
TRUE if x is a cross object of type 'bc' (backcross), FALSE otherwise
TRUE if x is a cross object with valid genoprobs for each chromosome, FALSE otherwise
Robert W. Corty rcorty@gmail.com
Robert W. Corty rcorty@gmail.com
Robert W. Corty rcorty@gmail.com
Robert W. Corty rcorty@gmail.com
Robert W. Corty rcorty@gmail.com
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | is.scanonevar(x = 3)
test.cross <- qtl::sim.cross(map = qtl::sim.map(len = rep(20, 4), n.mar = 5))
test.cross <- qtl::calc.genoprob(cross = test.cross, step = 2)
x <- scanonevar(cross = test.cross)
is.scanonevar(x)
is.cross(3)
is.cross(qtl::sim.cross(map = qtl::sim.map()))
is.cross(3)
is.cross(qtl::sim.cross(map = qtl::sim.map()))
is.cross(3)
is.cross(qtl::sim.cross(map = qtl::sim.map()))
a <- qtl::sim.cross(map = qtl::sim.map())
is.cross.w.genoprobs(x = a)
b <- qtl::calc.genoprob(cross = a)
is.cross.w.genoprobs(x = b)
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